The OOT and MM part pretty much covers the games so go for the TSOAH part for my story or idea if you have not played the either of those games. Time line wise I think it is obvious what one we are following and it does have a four swords feel to it.

[b][i]OOT[/i][/b]
[hider=OOT]
[center]Once there was a boy, a boy who was alone.
This boy only wanted one thing, a fairy of his own.
One day he got what he wished for as he set out on a journey to save Hyrule. 
He journeyed across the land to gather three gems before setting foot inside the time of time.
There he went from a boy to a man, seven years had passed.
He then went on to save the land of Hyrule from Ganon and save the princess.
When he did that Zelda sent him back so he could live his childhood life and so Link left to do just that.[/center]
[/hider]

[b][i]MM[/i][/b]
[hider=MM][center]After roaming for a while Link had his friend taken from him and set out to find him, on his way he was cursed before reaching Termina to help the poor people.
Link was told to recover his mask which he failed to do the first time but hope was still there as long as the boy had his instrument to travel back in time.
He travelled to the swamps, the mountains, the ocean and valley of the dead where he freed the giants.
Along the way he had collected mask which helped him throughout his journey.
 With the help of the giants he went to challenge the skull kid and he won but the battle was not over.
With the moon still coming, now at a faster rate Link found himself in a strange place.
Within there were four challenges he had to take and he beat all of them and obtained the ultimate mask when he had none left.
He had fought and beat Majora three times before defeating it.
He had done what the happy mask salemen wanted and soon set off once more.[/center]
[/hider]

[b][i]TSOAH[/i][/b]
[center]After roaming various lands Link had returned to visit Zelda once more. Link and Zelda were 16 at this point. The land of Hyrule had grown since the last time he was here but a new evil was afoot, one that was waiting for the hero of time to return to these lands. The villain the people refer to as X has returned, there name must never to be 
said. This name is known in both lands of Hyrule and Termina. 
Now it is time for X to appear and reclaim the lands of Hyrule and Termina and allow the world of evil to come and rule the world of light. Set before Twilight Princess and after MM, Link will face himself, five of him in fact. Each a different part of him.
All five must team up and defeat the evil known as X by powering the split master sword up and helping those in need to power Link somewhat more.
Has Zelda be taken or killed; only time will tell.
Each with a fragment of the Master Swords power, on its own it is weaker but together it acts as one making the blade complete.
Each with a item that only they can use and each have a bow to use along side there fragment of power Master Sword[/center]