...um, no, it just plain doesn't make sense. Genocide stopping, theft stopping and terrorism stopping is what Zyguard ALREADY does. Pretty sure people going to other worlds and attacking their citizens and governments for their own gain and reason is considered an act of terrorism BEFORE we even get into war. Theft also falls into things the villains can be doing and a genocidal situation or even world destruction aren't off the table either. I still don't see how Zyguard would be seen as evil by her considering they do what you seem to be saying she does, on a much bigger level.

Zyguard's not a 'liberating' organization or involved in wars, it's a non-interference organization.