Cypress is basically off work and as she is neither Hero nor Merc she has no part in protection or destruction of the present target
Her Boss isn't interested in getting his prize Meta Involved in a mess that is already an over loaded situation, besides his plans are a little less predictable.
Heck I'd even venture a guess that the plans an data stolen by Ruby might be a mixture of Fact and disinformation

He pays Cypress to give his company an edge technologically not as a weapon or enforcer, hell he wanted to do that he hires Mercs after all they're disposable

So seeing as how she's an industrial asset who's richly rewarded for her work Cypress plans to enjoy the perks her life affords