[quote=@The Patriarch]
So now the government is the enemy, is this now a government vs the people story or is there still going to be evil metahumans who aren't affiliated with the government?
[/quote]

Of course not! The government isn't the enemy, they just made Ruby into what she is now. Aperture are still the bad guys, so to speak. In fact, the only meta affiliated with the government is Taylor who is quickly losing their trust!