Ok. So I figured I explain a little more of what you have to expect.

[i]Mook Battle[/i] This is where you are basicly fighting the equivelent of of movie extras. You get a number of mooks you can beat. And then you garner style points from taking them out in spectacular ways. This is to encourage more colorfull writing and taking in surroundings and using them to your advantage. Mook battles are fast and brawly and FUUUUNNN. Also mayhem is generally encouraged. Consider this your chance to be properly superior to your opponents. Sometimes, I won't specify the number of mooks and just go "army of ninjas between you and Iron Shogun". At that point you get to go haywire while moving towards your goal. 

A [i]Normal Battle[/i] like the one vs the bioweapong will work pretty much as you expect it to. It is gonna take a while, but barring huge mistakes you should be fine.... I think.

[i]Doom Battles [/i]are far more tricky. These have you fighting enemies that won't be dispatched easily. Consider these your boss battles if you will. Supervillains and Superheroes both generally belong to this catagory. Not ever Doom battle can be won. Consider the possibility of retreating!