[quote=@Nimda]
<Snipped quote by Disdain>

What if Baphumet is trying to take all of our Codex Essence because she wants to defeat Dark and knows we can't work together well enough to do it?
[/quote]

Hasn't she been doing this since before Dark was killed? If Dark was killed, then she wouldn't need to do it anymore, but she still remained our enemy.