Gotta be 100% honest. And I mean no offense with this but, it seems like both of the teams are nothing more than your generic copy-paste bad guys with team Amethyst and some...sorta pseudo police force that seems in my opinion not even needed.

Eh...we'll see how it goes but at the moment, I am less than thrilled about this development of how things work within this world. 

Seems kinda...standard and boring.

Plus, if no one else, not even a small minority that thinks that way or some small truth to those words then there's no logical reason for Claire to believe that as well, especially if the pokemon themselves feel nothing negative about this (which I feel is a bit much. You say they could experience jealousy, but pokemon are just as varied as humans in terms of personality. There are probably quite a few out there that would feel rather negatively about being left in a PC box/with a professor and never used). I dunno, just seems less feasible for Claire to have these personality traits given the setting, and it's less compelling for her character.

...although, it could be interesting if she is the first to think that way and then later becomes the leader of some Team similar to Plasma, but not some organization led by some power hungry insane guy. Heh...hehe. But well, still less compelling of a motive since their mission statement would hold no actual fact if its just a given that pokemon being in a PC box is just a given and none of them even hate or dislike it.

But well, carry on. My opinions have no hold on the grand scheme of things xD
I will think on things, but as it is I may end up changing Claire slightly to better suit the setting.