[quote=@Silvan Haven]
Star Trek writers seem to do a terrible job at making Section 31 the bad guys.
[/quote]

I mean they operated very much under the "The ends justify the means" mentality but nothing they did I think was really wrong. Though if I were them I'd have arranged for the cure to the metagenic virus to be offered to the Founders in exchange for surrender. Would have saved a really lot of lives if they'd done that before marching on Cardassia.