The larger transformers would need to stay it a docking bay if they came to the station, but they could stay on Bajor. Thundercats and Heman are magic heavy, but they could work fine.   Doesn't Thundercats have some advanced tech in it too?

Andromeda was created by Gene Rodenberry too, and could fit in well with Star Trek.  Just imagining Tyr in a fight with some Klingons.  I wonder how he'd feel about replicated food, since he prefers organic?  Would he be one of those "real food is more nutritious" people or would he not care as long as it was a balanced meal?