[quote=@Inmento Riku]
<Snipped quote by Reflection>

Where they normally would, just tweaked a bit. Since Peter would've been off earth when Hydra took over, he wouldn't be under it's influence yet. Thanos would be just as weird and purple as he's always been. 
[/quote]

Well when did Hydra take over? If they took over in the 40's that'd change Peter's backstory some. Heck, we could probably get away with a quite a few changes. Heck, we could probably get away with making Rocket Raccoon a Moongoose or something. Just tossing out random ideas. Heck, Quill could have been rescued from the Hydra lifestyle and is still struggling with some of that prejudice expected of people in that regime. 

The Winter Soldier would probably be somebody else entirely, and Punisher could very well be even more brutal and bloodthirsty, or a nicer guy than before. If we're going alternate universe, we should free up our ideas a bit. Eheheheheh~