[@Shandria] Well, the trick of it as I look is there's a bit of a gap between understanding the theories and the chemistry having the ability to influence them with the circle. However, if you want, the Booksmarts could be expanded to cover the manipulation as well.

Moving forward then, the way Analysis would work as it is now is the bonus would kick in when she needs to solve some form of puzzle or problem out while under pressure, since it seems to be more angled toward keeping cool in those circumstances. If that's fine with you, just add a small bit to the end of Booksmarts that notes she's able to do the transmutations (just for the sake of being thorough) and you should be good!